Illinois Data Bank

Datasets for phylogenomics of the leafhopper genus Neoaliturus Distant

A newer version of this dataset is available. View the latest version.

The following files include specimen information, DNA sequence data, and additional information on the analyses used to reconstruct the phylogeny of the leafhopper genus Neoaliturus as described in the Methods section of the original paper:
1. Taxon_sampling.csv: contains data on the individual specimens from which DNA was extracted, including sample code, taxon name, collection data (locality, date and name of collector) and museum unique identifier.
2. Alignments.zip: a ZIP archive containing 432 separate FASTA files representing the aligned nucleotide sequences of individual gene loci used in the analysis.
3. Concatenated_Matrix.fa: is a FASTA file containing the concatenated individual gene alignments used for the maximum likelihood analysis in IQ-TREE.
4. Genes_and_Loci.rtf: identifies the individual genes and loci used in the analysis. The partition name is the same as the name of the individual alignment file in the zipped Alignments folder.
5. Partitions_best_scheme.nex: is a text file in the standard NEXUS format that indicates the names of the individual data partitions and their locations in the concatenated matrix, and also indicates the substitution model for each partition.

Life Sciences
leafhopper; phylogeny; anchored-hybrid-enrichment; DNA sequence; insect
CC0
U.S. National Science Foundation (NSF)-Grant:DEB-1639601
Christopher H. Dietrich
185 times
Version DOI Comment Publication Date
2 10.13012/B2IDB-8336414_V2 Added 2 new files per journal's suggestion: Scripts_and_description.zip and Full_genetic_distances_matrix.csv. 2024-04-05
1 10.13012/B2IDB-8336414_V1 2024-01-18

1.14 MB File
11.6 MB File
652 KB File
10.5 KB File
9.48 KB File

Contact the Research Data Service for help interpreting this log.

RelatedMaterial destroy: {"material_type"=>"Article", "availability"=>nil, "link"=>"", "uri"=>"", "uri_type"=>"", "citation"=>"Sinaiko, G., Cao, Y., & Dietrich, C. H. (in review). Phylogenomics of the leafhopper genus Neoaliturus Distant, 1918 (Hemiptera: Cicadellidae: Deltocephalinae) reveals genetically divergent lineages in the invasive beet leafhopper. Submitted to Molecular Phylogenetics and Evolution ", "dataset_id"=>2632, "selected_type"=>"Article", "datacite_list"=>"", "note"=>"", "feature"=>false} 2025-01-08T23:48:47Z
RelatedMaterial create: {"material_type"=>"Dataset", "availability"=>nil, "link"=>"https://doi.org/10.13012/B2IDB-8336414_V2", "uri"=>"10.13012/B2IDB-8336414_V2", "uri_type"=>"DOI", "citation"=>" (2024): Datasets for phylogenomics of the leafhopper genus Neoaliturus Distant. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-8336414_V2", "dataset_id"=>2632, "selected_type"=>"Dataset", "datacite_list"=>"IsPreviousVersionOf", "note"=>nil, "feature"=>nil} 2024-04-03T22:14:57Z
Research Data Service Illinois Data Bank
Access and Use Policies Web Privacy Notice Contact Us