Simulation Data for JUMPER: Discontinuous Transcript Assembly in SARS-CoV-2
Dataset Description |
This data contains bam files and transcripts in the simulated instances generated for the paper 'JUMPER: Discontinuous Transcript Assembly in SARS-CoV-2' submitted for RECOMB 2021. The folder 'bam' contained the simulated bam files aligned using STAR wile the reads were generated using the method polyester Note: in the readme file, close to the end of the document, please ignore this sentence: 'Those files can be opened by using [name of software].' |
Subject |
Life Sciences |
Keywords |
transcript assembly; SARS-CoV-2; discontinuous transcription; coronaviruses |
License |
CC0 |
Funder |
U.S. National Science Foundation (NSF)-Grant:CCF-2027669 |
Corresponding Creator |
Mohammed El-Kebir |
Downloaded |
442 times |
| Version | DOI | Comment | Publication Date |
|---|---|---|---|
| 1 | 10.13012/B2IDB-6667667_V1 | 2020-11-06 |
Contact the Research Data Service for help interpreting this log.
| RelatedMaterial | create: {"material_type"=>"Article", "availability"=>nil, "link"=>"https://doi.org/10.1101/2021.02.12.431026", "uri"=>"10.1101/2021.02.12.431026", "uri_type"=>"DOI", "citation"=>"Palash Sashittal, Chuanyi Zhang, Jian Peng, Mohammed El-Kebir. 2021. Jumper Enables Discontinuous Transcript Assembly in Coronaviruses. bioRxiv doi: https://doi.org/10.1101/2021.02.12.431026", "dataset_id"=>1573, "selected_type"=>"Article", "datacite_list"=>"IsSupplementTo"} | 2021-02-22T16:32:23Z |
| RelatedMaterial | create: {"material_type"=>"Code", "availability"=>nil, "link"=>"https://github.com/elkebir-group/Jumper", "uri"=>"https://github.com/elkebir-group/Jumper", "uri_type"=>"URL", "citation"=>"https://github.com/elkebir-group/Jumper", "dataset_id"=>1573, "selected_type"=>"Code", "datacite_list"=>"IsSupplementTo"} | 2021-02-22T16:32:23Z |
| Dataset | update: {"description"=>["This data contains bam files and transcripts in the simulated instances generated for the paper 'JUMPER: Discontinuous Transcript Assembly in SARS-CoV-2' submitted for RECOMB 2021. The folder 'bam' contained the simulated bam files aligned using STAR wile the reads were generated using the method polyester.", "This data contains bam files and transcripts in the simulated instances generated for the paper 'JUMPER: Discontinuous Transcript Assembly in SARS-CoV-2' submitted for RECOMB 2021. The folder 'bam' contained the simulated bam files aligned using STAR wile the reads were generated using the method polyester\r\n\r\nNote: in the readme file, close to the end of the document, please ignore this sentence: 'Those files can be opened by using [name of software].' "]} | 2020-11-08T02:55:59Z |
| Dataset | update: {"subject"=>["", "Life Sciences"]} | 2020-11-08T02:52:02Z |