Illinois Data Bank

Data for Intracellular Spatial Transcriptomic Analysis Toolkit (InSTAnT)

U-2 OS MERFISH data set prepared by the Han lab at UIUC based off of procedures developed in Moffitt et al. Proc. Natl. Acad. Sci. USA 113 (39), 11046–11051.
Data is comprised of ~2 million spots from 130 genes with x,y,z location, cell assignment, and correction status.

Life Sciences
smFISH; single transcript spatial transcriptomics; U-2 OS; Cancer cell line; MERFISH
CC BY
Hee-Sun Han
257 times
Version DOI Comment Publication Date
1 10.13012/B2IDB-2930842_V1 2024-06-27

697 Bytes File
36.9 MB File

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Dataset update: {"title"=>["20211118_U-2_OS_MERFISH_dataset", "Data for Intracellular Spatial Transcriptomic Analysis Toolkit (InSTAnT) "]} 2024-07-02T23:07:57Z
RelatedMaterial create: {"material_type"=>"Article", "availability"=>nil, "link"=>" https://doi.org/10.1073/pnas.1612826113", "uri"=>"10.1073/pnas.1612826113", "uri_type"=>"DOI", "citation"=>"Moffitt, J. R., Hao, J., Wang, G., Chen, K. H., Babcock, H. P., & Zhuang, X. (2016). High-throughput single-cell gene-expression profiling with multiplexed error-robust fluorescence in situ hybridization. Proceedings of the National Academy of Sciences of the United States of America, 113(39), 11046–11051. DOI: \r\nhttps://doi.org/10.1073/pnas.1612826113", "dataset_id"=>2444, "selected_type"=>"Article", "datacite_list"=>"IsSupplementedBy", "note"=>"", "feature"=>nil} 2024-07-02T16:24:38Z
Dataset update: {"version_comment"=>[nil, ""], "subject"=>[nil, "Life Sciences"]} 2024-07-02T16:24:38Z
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