Illinois Data Bank

PICAN-PI Public Data

Cite this dataset:
Nute, Michael; Yarlagadda, Karthik; Stumpf, Rebecca (2019): PICAN-PI Public Data. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-1678505_V1

Dataset Description

This dataset contains all data used in the two studies included in "PICAN-PI..." by Nute, et al, other than the original raw sequences. That includes: 1) Supplementary information for the Manuscript, including all the graphics that were created, 2) 16S Reference Alignment, Phylogeny and Taxonomic Annotation used by SEPP, and 3) Data used in the manuscript as input for the graphics generation (namely, SEPP outputs and sequence multiplicities).

Subject

Life Sciences

Keywords

 microbiome; data visualization; graphics; phylogenetics; 16S

License

 CC0

Funder

 U.S. National Science Foundation (NSF)-Grant:AF: 1513629

Funder

 U.S. National Science Foundation (NSF)-Grant:BCS 0820709

Corresponding Creator

 Rebecca Stumpf

Downloaded

 1746 times
Version DOI Comment Publication Date
1 10.13012/B2IDB-1678505_V1 2019-02-07

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RelatedMaterial update: {"material_type"=>["Dataset", "Article"], "link"=>["http://rdp.cme.msu.edu/", "https://doi.org/10.1093/nar/gkn879"], "uri"=>["", "10.1093/nar/gkn879"], "uri_type"=>["", "DOI"], "citation"=>["Cole, J. R., Wang, Q., Cardenas, E., Fish, J., Chai, B., Farris, R. J., Kulam-Syed-Mohideen, A. S., McGarrell, D. M., Marsh, T., Garrity, G. M., and Tiedje, J. M. (2009). The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic acids research, 37(Database issue), D141–5.", "J. R. Cole, Q. Wang, E. Cardenas, J. Fish, B. Chai, R. J. Farris, A. S. Kulam-Syed-Mohideen, D. M. McGarrell, T. Marsh, G. M. Garrity, J. M. Tiedje, The Ribosomal Database Project: improved alignments and new tools for rRNA analysis, Nucleic Acids Research, Volume 37, Issue suppl_1, 1 January 2009, Pages D141–D145, https://doi.org/10.1093/nar/gkn879"], "selected_type"=>["Dataset", "Article"], "datacite_list"=>["", "IsSupplementedBy"], "note"=>[nil, ""], "feature"=>[nil, false]} 2024-02-05T21:49:46Z
RelatedMaterial update: {"uri"=>["", "http://publish.illinois.edu/michaelnute/research/pican-pi"], "uri_type"=>["", "URL"], "datacite_list"=>["", "IsSupplementedBy"], "note"=>[nil, ""], "feature"=>[nil, false]} 2024-02-05T21:49:46Z
Dataset update: {"subject"=>["", "Life Sciences"]} 2019-02-12T19:48:43Z
RelatedMaterial update: {"uri"=>[nil, ""], "uri_type"=>[nil, ""], "datacite_list"=>[nil, ""]} 2019-02-07T22:31:46Z
RelatedMaterial update: {"uri"=>[nil, ""], "uri_type"=>[nil, ""], "datacite_list"=>[nil, ""]} 2019-02-07T22:31:46Z
RelatedMaterial update: {"uri"=>[nil, ""], "uri_type"=>[nil, ""], "datacite_list"=>[nil, ""]} 2019-02-07T22:31:46Z
Dataset update: {"keywords"=>["microbiome, data visualization, graphics, phylogenetics, 16S", "microbiome; data visualization; graphics; phylogenetics; 16S"], "version_comment"=>[nil, ""], "subject"=>[nil, ""]} 2019-02-07T22:31:46Z
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