Illinois Data Bank

Miscanthus sinensis multi-location trial: phenotypic analysis, genome-wide association, and genomic prediction

Cite this dataset:
Clark, Lindsay V.; Dwiyanti, Maria Stefanie; Anzoua, Kossonou G.; Brummer, Joe E.; Ghimire, Bimal Kumar; Głowacka, Katarzyna; Hall, Megan; Heo, Kweon; Jin, Xiaoli; Lipka, Alexander E.; Peng, Junhua; Yamada, Toshihiko; Yoo, Ji Hye; Yu, Chang Yeon; Zhao, Hua; Long, Stephen P.; Sacks, Erik J. (2019): Miscanthus sinensis multi-location trial: phenotypic analysis, genome-wide association, and genomic prediction . University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0790815_V3

Dataset Description

This dataset contains genotypic and phenotypic data, R scripts, and the results of analysis pertaining to a multi-location field trial of Miscanthus sinensis. Genome-wide association and genomic prediction were performed for biomass yield and 14 yield-component traits across six field trial locations in Asia and North America, using 46,177 single-nucleotide polymorphism (SNP) markers mined from restriction site-associated DNA sequencing (RAD-seq) and 568 M. sinensis accessions. Genomic regions and candidate genes were identified that can be used for breeding improved varieties of M. sinensis, which in turn will be used to generate new M. xgiganteus clones for biomass.

Subject

Life Sciences

Keywords

 miscanthus; genotyping-by-sequencing (GBS); genome-wide association studies (GWAS); genomic selection

License

 CC BY

Funder

 U.S. Department of Energy (DOE)-Grant:DE-SC0006634

Funder

 U.S. Department of Energy (DOE)-Grant:DE-SC0018420

Corresponding Creator

 Erik J. Sacks

Downloaded

 6869 times
Version DOI Comment Publication Date
3 10.13012/B2IDB-0790815_V3 One R script was updated and an another was added in response to peer review 2019-03-25
2 10.13012/B2IDB-0790815_V2 Updated files from v1 2018-12-19

Open in Globus what's this?
11.7 KB File
17.7 KB View File
2.72 MB File
8.49 MB View File
15.1 KB File
34.7 KB View File
10.3 MB View File
55 KB View File
9.39 MB View File
15.9 KB View File
1.32 KB View File
150 KB View File
2.9 KB File
12.4 MB View File
1.29 MB View File
10.1 KB File
17.5 KB File
6.57 KB File
1.57 KB File
19.2 KB File
42.6 KB File
12.1 KB File
18.8 KB File
21.2 KB File
23.2 KB File
6.68 KB File
40.2 KB File
21.9 KB File
116 MB View File
953 MB File
4.85 MB View File
188 MB View File
59.7 MB View File
104 MB File
60.9 MB File
6.45 KB View File
13 KB View File
1.5 KB File
3.77 KB File
3.77 KB File
22.6 KB View File
16.2 KB View File

Contact the Research Data Service for help interpreting this log.

RelatedMaterial update: {"material_type"=>["Dataset", "Article"], "selected_type"=>["Dataset", "Article"]} 2019-04-16T16:59:49Z
RelatedMaterial create: {"material_type"=>"Dataset", "availability"=>nil, "link"=>"https://doi.org/10.1111/gcbb.12620", "uri"=>"10.1111/gcbb.12620", "uri_type"=>"DOI", "citation"=>"Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K. , Hall, M. , Heo, K. , Jin, X. , Lipka, A. E., Peng, J. , Yamada, T. , Yoo, J. H., Yu, C. Y., Zhao, H. , Long, S. P. and Sacks, E. J. (2019), Genome‐wide association and genomic prediction for biomass yield in a genetically diverse Miscanthus sinensis germplasm panel phenotyped at five locations in Asia and North America. GCB Bioenergy. Accepted Author Manuscript. doi:10.1111/gcbb.12620", "dataset_id"=>872, "selected_type"=>"Dataset", "datacite_list"=>"IsSupplementTo"} 2019-04-16T16:59:17Z
RelatedMaterial update: {"datacite_list"=>["", "IsSupplementTo"]} 2019-03-26T15:51:33Z
RelatedMaterial update: {"datacite_list"=>["", "IsSupplementedBy"]} 2019-03-26T15:51:33Z
RelatedMaterial update: {"datacite_list"=>["", "IsSupplementedBy"]} 2019-03-26T15:51:33Z
RelatedMaterial update: {"datacite_list"=>["", "IsSupplementedBy"]} 2019-03-26T15:51:33Z
RelatedMaterial update: {"datacite_list"=>["", "IsSupplementedBy"]} 2019-03-26T15:51:33Z
Research Data Service Illinois Data Bank
Access and Use Policies Web Privacy Notice Contact Us